MatchCLOT

Matching single cells across modalities with contrastive learning and optimal transport.

Preprint available on bioRxiv: MatchCLOT: Single-Cell Modality Matching with Contrastive Learning and Optimal Transport

Note

The package and documentation are currently under development.

Installation

You can install MatchCLOT from PyPI using pip:

` pip install matchclot `

Quickstart tutorial

• Quickstart
  • Requirements
  • Download pretrained MatchCLOT
  • Example Data
  • Run pretrained MatchCLOT
  • Results on the example dataset

API

• matchclot package
  • matchclot.embedding package
  • matchclot.matching package
  • matchclot.preprocessing package
  • matchclot.run package
  • matchclot.utils package